BMB Review
Overview of Biochemistry and Molecular Biology

Biochemistry/Molecular Biology (BMB) Mission Statement
Program Objectives
Program Assessment

History of the Kenyon BMB Program
Biochemistry Synoptic Major at Kenyon (1993-1994)
Formalization of the Biochemistry and Molecular Biology Program (1995) 

Current BMB Program
Program Requirements
Student Enrollment 
Core Faculty Participants
Program Strengths
Current Challenges and Future Goals

Appendices
Appendix I. Kenyon's Requirements for the Synoptic Biochemistry major (1993-1995)
Appendix II. ACS Requirements those Recommended by the American Society for Biochemistry and Molecular Biology (Boyer, 1993) for a Biochemistry Major
Appendix III. Student Response to the 2002 Questionnaire on
Biochemistry and Molecular Biology 16

Biochemistry/Molecular Biology (BMB) Mission Statement 

The intersection of chemistry and biology provides a creative focus for understanding the molecular processes of life. In the scientific literature, interdisciplinary research efforts are now commonplace, while in the classroom, chemists frequently address biological topics and the chemistry of biological processes is often treated by biologists. Kenyon's Chemistry and Biology departments offer an interdisciplinary program including two majors, Biochemistry and Molecular Biology, each of which combines aspects of their curricula. The majors in Biochemistry and Molecular Biology are intended for students whose interests lie at the exciting interface of chemistry and biology. 

The Biochemistry major provides a chemistry-based curriculum with a significant biology component, producing a solid background for continuing graduate work in biochemistry and chemistry.

The Molecular biology major combines a substantial chemistry background with studies in cellular and molecular biology that prepares students for research in fields such as biomolecular structure, gene regulation, genomics, and proteomics. 

Program Objectives

  • Students experience a variety of educational settings, including classroom and laboratory work utilizing state-of-the-art instrumentation, collaborative work with other students and collaborative research with faculty in both biochemistry and molecular biology. 
  • Students prepare extensive written reports, and make oral and web-based presentations both in course and to off-campus professional audiences in order to express their own views, interpretations, ideas and understandings, especially as these apply to the synthesis of chemistry and biology.
  • Students acquire an understanding of current developments, knowledge and experimental techniques in biochemistry or molecular biology and related fields.
  • Students learn to review, synthesize, critique and integrate relevant concepts, discoveries and applications in biochemistry or molecular biology and related fields.
  • Students learn to search the scientific literature, especially that in electronic form, and to read and critically interpret that literature in both chemistry and biology.
Major Requirements
Units
Biochemistry
Molecular Biology
CHEM 111-112 Introductory Chemistry
or CHEM 115-116 Honors Introductory Chemistry
 
 
CHEM 113-114 Introductory Chemistry Lab
or CHEM 117-118 Honors Introductory Chemistry Lab
 1
 
 
CHEM 231-232 Organic Chemistry
 1
 
 
CHEM 233-234 Organic Chemistry Laboratory
 1/2
 
 
BIOL 113 From Cell to Organism
 1/2
 
 
BIOL 114 Genetics and Development
1/2 
 
 
BIOL 363  Molecular Biology and Genomics
 1/2
 
 
 BIOL 364 Gene Manipulation
 1/2
 
 
 CHEM 356 Biochemistry
 1/2
 
 
CHEM 335 Chemical Kinetics and Thermodynamics
 1/2
 
 
CHEM 341 Instrumental Analysis
 1/2
 
 
CHEM 371 Biochemistry Advanced Lab
 1/4
 
 
Two labs from: CHEM 372, 373, 374, 375, 376
 1/2
 
 
One course from: BIOL 109-110, 109-111, 233, 238, 255, 321, 333, 341, 345, 355, 366
 1/2
 
 
BIOL 109 and 110 or 111, Introductory Lab in Biology
 1/2
 
 
Two courses from: BIOL 233, 238, 255, 321, 333, 341, 345, 358, or 366
 1
 
 
One advanced lab from: BIOL 234, 239, 256, 322, 342, 346, 367, or CHEM 371
1/4
# #
Senior Exercise under Chemistry (BCHM)
or Biology (MBIO)
# # #

Program Assessment

Our objectives will be assessed by evaluating:

  • Student performance in both Senior Exercise and Honors examinations 
  • Student career paths 
  • End of the year Student Questionnaire (Appendix III)
  • Student performance in off-campus presentations 
History of the Kenyon Biochemistry/Molecular Biology Program

Biochemistry Synoptic Major at Kenyon (1993-1994)

In the early 1990's and paralleling the trend nationwide, the Departments of Biology and Chemistry at Kenyon experienced increased student interest in molecular biology and biochemistry. Many of our honors and research students at that time chose to do molecular or biochemical projects, and increasing numbers of our students began attending graduate school in these fields. In 1993, in response to these demands, we instituted a Synoptic Biochemistry major, designed to provide students with biological and physical science background to go on in either graduate school in Biochemistry/Molecular Biology or medical school, or perhaps to enter a career in industrial biotechnology. Beyond the premedical core in Biology and Chemistry, the Synoptic major required 4 additional semesters of biology and 2 additional semesters of chemistry. The full list of these original requirements for the Synoptic major is given in Appendix I.

Formalization of the Biochemistry and Molecular Biology (BMB) Program (1995)

In 1994, the Biology and Chemistry departments presented a proposal to Kenyon’s Curricular Policy Committee for the formalization of the Synoptic Biochemistry Major (Appendix II). This proposal requested the institution of two new majors, Biochemistry (BCHM) and Molecular Biology (MBIO), under one new BMB Program. The proposal was approved for the 1995-1996 academic year, with the understanding that no additional staff and resources were required beyond those available to the departments of Biology and Chemistry. All students shared common core courses in their first two years, diverged at the upper-level, and were brought back together for a capstone Senior Exercise. Each student was assigned a mentor from both the Biology and Chemistry departments, and Senior Exercises, which consisted of an oral presentation and a 20 page research paper, were attended and evaluated by all members from each department. Along with curricular requirements, BMB students satisfied outside seminar speaker attendance requirements by participating in either department's program. 

Current BMB Program 

Program Requirements

The current requirements for the majors in Biochemistry and in Molecular Biology are above. The main changes in recent years have been:

  1. The elimination of the special program Senior Exercise, replaced by departmental Senior Exercises. Molecular Biology majors now perform the Biology Department Senior Exercise, and Biochemistry majors now perform the Chemistry Department Senior Exercise. This change was made to simplify administrative procedures for faculty and students. Nevertheless, students in either major retain the ability to conduct Honors research (and the associated Senior Exercise) with faculty mentors from either Biology or Chemistry departments.
  2. In response to student comments, some of the advanced course requirements for the Molecular Biology major were relaxed to allow greater choice of electives. The Plant Physiology requirement was replaced with an advanced Biology elective, and the Biochemistry lab requirement was replaced with an advanced Biology lab. Such changes have not been possible for the Biochemistry major because of the need to maintain ACS requirements.
Student Enrollment

The BMB program initially drew interest from a small but intensely committed group of students, some of whom had strong interests in research. Figure 1 depicts the number of majors in the program since 1993. It can be seen that the number of majors in Biochemistry has been small but steady, whereas the numbers in Molecular Biology grew rapidly in the first few years, then declined in 1999-2002. This decline coincided with a period in which staff departures led to key courses being taught by non-tenured visitors who lacked commitment and inspiration for students. Since then, we have hired two new chemists and two new molecular biologists who have done an outstanding job. The MBIO majors have started to increase again, and key courses (BIOL 363 Molecular Biology and Genomics; and BIOL 364 Gene Manipulation Lab) are oversubscribed.
 

Figure 1. Synoptic Biochemistry majors (class years 1993-1995) and majors in Biochemistry (BCHM) and Molecular Biology ( MBIO) (1996-2003).

Core Faculty Participants

At present the core participants in the Program include:
 
Chemistry

Rosemary A. Marusak, co-Chair (bioinorganic chemistry)
John K. Lutton (biochemistry)
Anthony Watson (synthetic organic chemistry)
Hussen Mohammed (bioorganic chemistry)
Sheryl Hemkin (biophysical chemistry)

Biology

Joan Slonczewski, co-Chair (microbiology)
Wade Powell (molecular biology)
Karen Hicks (molecular biology)
Chris Gillen (animal physiology)
Kathryn Edwards (plant physiology)
Harry Itagaki (animal physiology)

Mohammed, Hemkin, Hicks, and Powell are all recent hires that contribute tremendously to the building of the BMB curriculum and research efforts. The program description and course requirements have changed little since their inception. For comparison, the requirements for the ACS-certified major in Biochemistry and as suggested by the American Society for Biochemistry and Molecular Biology (ASBMB) are given in Appendix IV. The relatively young MBIO major currently has no equivalent professional recommendations. As can be seen, the BCHM major meets the demands of our professional organizations. We believe our MBIO major likewise meets a high standard. Full descriptions of courses offered in the BMB program and their syllabi are linked to the program web site.



Program Strengths

While required courses have remained constant over the years, the contributing faculty have made improvements that have strengthened the education for our majors. Our MBIO major combines depth in molecular genetics with a strong basis in chemistry, including a semester of physical chemistry. The chemistry background ensures that students realize the dynamic molecular dimension of biological molecules, more than just strings of bases or amino acids. In the core course BIOL 363 Molecular Biology and Genomics, students combine genomic analysis of sequences with three-dimensional structural analysis of proteins and nucleic acids, including structure and function of the recently solved ribosome. A highlight of this course is the student-authored Chime tutorials on Biomolecules (see web site). 

The Molecular Biology and Genomics course effectively complements the Chemistry Department's Biochemistry course. Students enjoy taking courses concurrently because they each emphasize fundamental structure of molecules: Biochemistry focuses on the essential chemistry of the building blocks, whereas Molecular Biology puts together complex structures within the framework of genomics and evolution and provide an excellent foundation for more advanced study in either department. 

The experimental foundation of the MBIO major is the lab course BIOL 364 Gene Manipulation developed by molecular biologist Wade Powell. This course effectively applies techniques of gene cloning and RNA expression to a research system, examining effects of pollutant compounds on gene expression in local aquatic animals.  Thus, the course not only trains students in basic skills common to biomedical research laboratories, it also directs these techniques to significant questions in environmental and evolutionary biology.  This lab has become so popular (with straight Biology majors, as well as BMB majors) that we had to provide a second section for next year.

The BCHM major ensures a rigorous analytical background while integrating a strong biological component. Instrumental analysis is required for our majors and advanced courses focus on bio-analytical methodologies. For example, in Advanced Biochemistry: Biomacromolecular Structure and Spectroscopy (Mohammed) students use CACHE to do conformational searches on carbohydrates, nucleic acids, and peptides in addition to studying macromolecular structure by 2-dimensional NMR spectroscopy. Hemkin's course will offer mathematical modeling of biophysical processes in cells. Advanced courses in molecular biology are highly recommended. Students choosing the BCHM path have attested to the program's success by tackling intense molecular biological-based senior exercise literature with relative ease. 

BCHM laboratories complement the physical nature of the general and advanced biochemistry courses. Advanced Laboratory: Biochemistry lab provides fundamentals of protein isolation and reactivity, and Advanced Laboratory: Biochemistry focuses on protein structure analysis using circular dichroism, uv-visible, and stopped-flow spectrophotometry and protein gel electrophoresis. 

The techniques learned by the students in both MBIO and BCHM laboratories serve them well in Honors research and in the workforce. Indeed, students bring cross-disciplinary ideas and expertise to our research programs. For example, students in Marusak's laboratory brought DNA electrophoresis techniques to her mechanistic inorganic laboratory, resulting in two publications. 

The opportunity for students of either major to do research in either department remains one of the great strengths of the BMB program. Three very successful recent cases include Biochemistry majors, Ansley Scott ('02) and John DePowell ('02), who carried out research in molecular biology laboratories and Molecular Biology major, Kamille Johnson ('99), who carried out her research in Chemistry. Scott comments "By being a Biochemistry major I felt I had the tools to really attack the toughest problems in molecular biology." Scott is going on to Berkeley for a PhD in molecular biology, and Johnson is currently enrolled in the science education program at Vanderbilt U.



Current Challenges and Future Goals

The BCHM-MBIO program faces several challenges to maintain our excellence and further develop our offerings for students.

  • The recent upsurge in student interest in the program has strained the size of key courses. We need to decide whether and how to staff extra sections. Fortunately for next year in the Biology Department, a visiting Minority Fellow can fill in the second section of the molecular lab, but in the future the regular faculty will face the need to fill this niche. Similarly, despite the addition of a new seventh person in Chemistry, faculty members continue to teach overloads. Due to student demand in the BMB program, Lutton normally teaches two sections of Advanced Lab: Biochemistry. In addition, to meet ACS requirements, all advanced laboratories (including Biochemistry sections) meet two afternoons per week, putting additional time constraints on students and faculty.
  • As noted in Student Questionnaire responses (Appendix VI), students express the desire to take more advanced electives. We need to find ways to accommodate this interest while maintaining our broad core program of biology and chemistry foundation courses. Chemistry has attempted to respond to this by making Biochemistry (CHEM 256) a sophomore level course, encouraging students to take the course early and have an extra year for electives. This change reflects the strength in our students' education after taking both introductory Biology and Chemistry courses.
  • Some students, as expressed in the student questionnaire, desire a capstone senior course that brings all BMB majors together to share a final common experience. The common Senior Exercise is no longer available, and early attempts at developing a common laboratory experience for our majors, a team-taught Macromolecular Analysis Laboratory, failed due to insufficient resources. We need to reexamine our potential for unifying our majors in their senior year. In the same spirit, both departments may want to commit themselves to supporting joint seminar speakers. One successful activity bringing majors together is the annual pizza party at which students present their web projects from molecular biology. 
  • Faculty involved in the BMB program need to communicate more effectively in order to be aware of what is being taught in different courses, and to advise students on course selection. We are establishing regular informal meetings of members of the program. 
  • More collaborative research efforts should be sought and established. Currently, a few cross-departmental collaborations exist. Joan Slonczewski has hired Affiliated Scholar in Chemistry, Elizabeth Yohannes, as a research fellow conducting proteomic studies of bacterial metabolism of short-chain organic acids. Marusak's lab works with Affiliated Scholar in Biology, Kenneth Eward, on an epi-fluorescence microscopy project. These research projects have attracted several talented undergraduates majoring in BCHM or MBIO. In addition, Marusak (Chemistry) and Edwards (Biology) submitted a Merck-AAAS proposal for cross-disciplinary (Biology-Chemistry) which will be resubmitted next fall. 


Appendix I. Kenyon's Requirements for the Synoptic Biochemistry major (1991-1995)

In addition to the following, it is recommended that majors take Calculus and 1 yr. of Physics.
 

4.25 units of Chemistry
General Chemistry 1.0 units
General Chemistry Lab 0.5
Organic Chemistry 1.0 
Organic Chemistry Lab 0.5
Physical Chemistry 0.5
Biochemistry 0.5
Biochemistry Lab 0.25
 
 
 
 

 

3.75 units of Biology
Introductory Biology 1.0
Introductory Biology Lab 0.5
Molecular Biology 0.5
Plant Physiology 0.5
 
 
 
 
 
 
 

 

1.25 units from:
Principles of Gene Manipulation 0.25
Developmental Biology 0.5
Developmental Biology Lab 0.25
Microbiology 0.5
Microbiology Lab 0.25
Comparative Physiology 0.5
Comparative Physiology Lab 0.25
Genetics 0.5
Genetics Lab 0.25
Neurobiology 0.5
Neurobiology Lab 0.25
Cell Physiology .5
Cell Physiology Lab 0.25

ADVISORS: The Biochemistry major must select two faculty advisors, one in both the Biology and Chemistry Departments

HONORS: The Biochemistry major may choose to do Honors in either Chemistry or Biology.



Appendix II. ACS Requirements: Recommended by the American Society for Biochemistry and Molecular Biology (Boyer, 1993) for a Biochemistry Major

ACS Requirements for Biochemistry Major

Beyond the introductory level, three semester hours of biology, which contains cell biology, microbiology, or genetics; six semester hours of biochemistry, which has organic chemistry as a prerequisite; and one semester of a laboratory in biochemical methods. Research in biochemistry culminating in a comprehensive written report is highly recommended.

Biochemistry Major Recommended by the American Society for Biochemistry and Molecular Biology (Boyer, 1993)

General Chemistry and Lab (2 semesters), Organic Chemistry and lab (2 semesters), Physical Chemistry (1 semester), Analytical/Instrumental chemistry (1 semester)*, Biochemistry (2 semesters), Advanced Biology (2 semesters). Independent Research (strongly recommended), Physics (2 semesters), Calculus (2 semesters).



Appendix III. Student response to the preliminary questionnaire on Biochemistry and Molecular Biology (senior majors graduating in 2002)
Note: A more extensive survey of BCHM and MBIO graduates since the beginning of the program has been conducted.  The results are provided in an Excel table in the review folder.

1. Why did you select the major in BCHM? What aspects of the major have been most helpful for you?

    • I selected the BCHM major because it allowed me to take classes in both biology and chemistry. I am fascinated with these two topics, but I have a hard time choosing between them. This program gave me this opportunity. I thought being between two departments would make me feel like I was isolated from both, but on the contrary, I felt embraced by both departments.
    • Interest in both biology & chemistry, as well as the vet school prerequisites in each. Laboratory study/research.
  1. What aspects of the major program could be improved?
    • No suggestions at this time.
    • I think a single capstone seminar for both biochemistry and molecular biology majors should be offered. We take many of the same classes and it would be great to have a final senior class together. It would be cool if one prof from the chem and one from the bio dept. taught it.
  1. Which specific courses in the BCHM/MBIO program did you find most useful and why?
    • MolBio Lab (Gene Manipulation), as it provided a realistic, long-term research opportunity that covered a number of laboratory techniques.
    • I really like organic with Watson, Mol bio with Dr. S., and Biochm with Lutton, and Mol Bio lab with Powell.
  1. Which specific course requirements might be changed or improved?
    • Thought that the course list was appropriate.
    • I think the requirements are fair.
  1. Which additional courses would you like to see offered as part of this program?
- No suggestions at this time.
    • I wish I could have taken more courses especially more advanced courses. I was stuck taking a lot of intro classes.
  1. Did the facilities, laboratory and computer spaces effectively support your major?
    • Yes, especially after the addition of Fischman/Tomsich and new computers.
    • Yep
  1. Any further comments:
    • None.
    • Thanks, I am glad that I had the opportunity to be in the program.